Transcript: ENST00000418994.1 CAPN7-004

Description

calpain 7 [Source:HGNC Symbol;Acc:1484]

Gene Synonyms

CALPAIN7, PALBH, PalBH

Location

About this transcript

This transcript has 4 exons, is annotated with 2 domains and features, is associated with 5639 variant alleles and maps to 113 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000253693.2	CAPN7-001	4353	813aa	ENSP00000253693.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2624	Q9Y6W3	NM_014296.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415565.1	CAPN7-006	742	248aa	ENSP00000399486.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000457023.1	CAPN7-005	854	42aa	ENSP00000389786.1	Nonsense mediated decay		F8WDQ3	-	-
ENST00000443567.1	CAPN7-007	805	112aa	ENSP00000394708.1	Nonsense mediated decay		H7C0F1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000418994.1	CAPN7-004	781	36aa	ENSP00000415482.1	Nonsense mediated decay		F8WCZ1	-	-
ENST00000463417.1	CAPN7-003	2319	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472400.1	CAPN7-008	501	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 781 bps, Translation length: 36 residues

Version

ENST00000418994.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000340722 (version 1)