Transcript: ENST00000545287.2 RHOT1-015

Description

ras homolog family member T1 [Source:HGNC Symbol;Acc:21168]

Gene Synonyms

ARHT1, FLJ11040, MIRO-1, MIRO1

Location

Chromosome 17: 30,469,556-30,552,132 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 31 domains and features, is associated with 35424 variant alleles and maps to 535 oligo probes.

Gene

This transcript is a product of gene ENSG00000126858.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358365.3	RHOT1-002	3297	691aa	ENSP00000351132.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32610	Q8IXI2	NM_001033568.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000583994.1	RHOT1-003	3289	523aa	ENSP00000462698.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSX7	NM_001288758.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581094.1	RHOT1-006	3231	580aa	ENSP00000462669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8IXI2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000333942.6	RHOT1-001	3133	618aa	ENSP00000334724.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32612	H7BXZ6 Q8IXI2	NM_018307.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394692.2	RHOT1-008	2960	650aa	ENSP00000378184.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSX7 Q8IXI2	NM_001288754.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354266.3	RHOT1-004	2919	597aa	ENSP00000346215.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BXZ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545287.2	RHOT1-015	2516	659aa	ENSP00000439737.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32611	Q8IXI2	NM_001033566.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580392.1	RHOT1-012	650	134aa	ENSP00000463532.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000581148.1	RHOT1-013	628	156aa	ENSP00000467272.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EP86	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582602.1	RHOT1-018	570	190aa	ENSP00000464851.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000584852.1	RHOT1-017	421	57aa	ENSP00000461992.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KRG7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000581031.1	RHOT1-005	3013	625aa	ENSP00000464094.1	Nonsense mediated decay		Q8IXI2	-	-
ENST00000578205.1	RHOT1-007	2771	51aa	ENSP00000462612.1	Nonsense mediated decay		J3KSR5	-	-
ENST00000584692.1	RHOT1-014	680	40aa	ENSP00000464674.1	Nonsense mediated decay		J3QSG2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580976.1	RHOT1-010	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000582586.1	RHOT1-016	426	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000581567.1	RHOT1-011	746	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 2,516 bps, Translation length: 659 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IXI2

CCDS

This transcript is a member of the Human CCDS set: CCDS32611

Version

ENST00000545287.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000447100 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000545287.2 RHOT1-015

Summary