Transcript: ENST00000415942.1 RBCK1-011

Description

RanBP-type and C3HC4-type zinc finger containing 1 [Source:HGNC Symbol;Acc:15864]

Gene Synonyms

C20orf18, HOIL-1, HOIL1, RBCK2, RNF54, UBCE7IP3, XAP3, XAP4, ZRANB4

Location

Chromosome 20: 388,697-411,610 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 14 domains and features, is associated with 11245 variant alleles and maps to 638 oligo probes.

Gene

This transcript is a product of gene ENSG00000125826.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356286.5	RBCK1-010	2774	510aa	ENSP00000348632.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13000	Q5JWR1 Q9BYM8	NM_031229.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000353660.3	RBCK1-009	2511	468aa	ENSP00000254960.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12998	Q9BYM8	NM_006462.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382181.2	RBCK1-006	2208	340aa	ENSP00000371616.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PVK0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475269.1	RBCK1-001	1200	105aa	ENSP00000417173.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PVJ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441733.1	RBCK1-013	961	116aa	ENSP00000387799.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PVJ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000400247.3	RBCK1-002	790	63aa	ENSP00000383106.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PVJ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000414880.1	RBCK1-007	765	255aa	ENSP00000393841.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000411647.1	RBCK1-004	593	117aa	ENSP00000415080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JWR1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000382214.3	RBCK1-005	2752	336aa	ENSP00000371649.3	Nonsense mediated decay		G3XAG9 Q5JWR1	-	-
ENST00000415942.1	RBCK1-011	2613	272aa	ENSP00000405288.1	Nonsense mediated decay		B4DML5 Q5JWR1	-	-
ENST00000400245.3	RBCK1-003	1024	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465226.1	RBCK1-012	372	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468272.1	RBCK1-008	1486	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 7, Transcript length: 2,613 bps, Translation length: 272 residues

Version

ENST00000415942.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000077462 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000415942.1 RBCK1-011

Summary