Transcript: ENST00000497038.2 PAX8-008

Description

paired box 8 [Source:HGNC Symbol;Acc:8622]

Location

Chromosome 2: 113,976,099-113,999,356 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 10015 variant alleles and maps to 393 oligo probes.

Gene

This transcript is a product of gene ENSG00000125618.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000429538.3	PAX8-001	4084	450aa	ENSP00000395498.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46398	Q06710 R9W7C9	NM_003466.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000348715.5	PAX8-004	3966	398aa	ENSP00000314750.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46399	Q06710	NM_013952.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000263335.7	PAX8-002	3735	321aa	ENSP00000263335.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42736	Q06710	NM_013953.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397647.3	PAX8-003	3633	287aa	ENSP00000380768.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42735	Q06710	NM_013992.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000263334.5	PAX8-201	1197	398aa	ENSP00000263334.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46399	Q06710	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000465084.1	PAX8-009	656	98aa	ENSP00000452547.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000468980.2	PAX8-006	525	173aa	ENSP00000451240.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000497038.2	PAX8-008	816	2aa	ENSP00000451618.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000554830.1	PAX8-012	556	31aa	ENSP00000451213.1	Nonsense mediated decay		G3V3F3	-	-
ENST00000485840.1	PAX8-005	2757	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467778.1	PAX8-007	1414	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554352.1	PAX8-013	567	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000480684.1	PAX8-010	527	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 1, Transcript length: 816 bps, Translation length: 2 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000497038.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000250360 (version 5)

Favourite species

All species

Recent locations

Transcript: ENST00000497038.2 PAX8-008

Summary