Transcript: ENST00000547887.1 HVCN1-008

Description

hydrogen voltage-gated channel 1 [Source:HGNC Symbol;Acc:28240]

Gene Synonyms

HV1, Hv1, MGC15619, VSOP

Location

Chromosome 12: 111,089,130-111,121,072 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 12448 variant alleles and maps to 88 oligo probes.

Gene

This transcript is a product of gene ENSG00000122986.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356742.5	HVCN1-001	2189	273aa	ENSP00000349181.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31900	F8VPF7 F8W0B3 Q96D96	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000242607.8	HVCN1-003	1634	273aa	ENSP00000242607.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31900	F8VPF7 F8W0B3 Q96D96	NM_032369.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548312.1	HVCN1-002	1301	255aa	ENSP00000449601.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VPF7 F8W0B3 Q96D96	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439744.2	HVCN1-004	1215	253aa	ENSP00000412052.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58278	Q96D96	NM_001256413.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549442.1	HVCN1-007	829	214aa	ENSP00000450106.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VPF7 F8W0B3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546713.1	HVCN1-006	539	78aa	ENSP00000447227.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W0B3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547887.1	HVCN1-008	441	79aa	ENSP00000448379.1	Nonsense mediated decay		F8VS40	-	-
ENST00000546425.1	HVCN1-005	788	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 441 bps, Translation length: 79 residues

Version

ENST00000547887.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000404656 (version 1)

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Transcript: ENST00000547887.1 HVCN1-008

Summary