Transcript: ENST00000395080.3 SPP1-001

Description

secreted phosphoprotein 1 [Source:HGNC Symbol;Acc:11255]

Gene Synonyms

BNSP, BSPI, ETA-1, OPN

Location

Chromosome 4: 88,896,840-88,904,449 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 16 domains and features, is associated with 3640 variant alleles and maps to 575 oligo probes.

Gene

This transcript is a product of gene ENSG00000118785.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000395080.3	SPP1-001	1473	314aa	ENSP00000378517.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43250	F2YQ21 P10451	NM_001251830.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000237623.7	SPP1-002	1565	300aa	ENSP00000237623.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3626	P10451	NM_000582.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360804.4	SPP1-003	1196	287aa	ENSP00000354042.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34027	F2YBS4 P10451 Q3LGB0	NM_001040060.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508233.1	SPP1-010	825	241aa	ENSP00000422973.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9C5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000509659.1	SPP1-004	1664	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509334.1	SPP1-009	760	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513981.1	SPP1-008	719	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508002.1	SPP1-006	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504310.1	SPP1-007	557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505146.1	SPP1-011	252	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,473 bps, Translation length: 314 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P10451

CCDS

This transcript is a member of the Human CCDS set: CCDS43250

Version

ENST00000395080.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253048 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000395080.3 SPP1-001

Summary