Transcript: ENST00000513148.1 HMGCL-009

Description

3-hydroxymethyl-3-methylglutaryl-CoA lyase [Source:HGNC Symbol;Acc:5005]

Gene Synonyms

Location

Chromosome 1: 24,135,777-24,151,906 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 6710 variant alleles and maps to 211 oligo probes.

Gene

This transcript is a product of gene ENSG00000117305.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000374483.4	HMGCL-201	2151	300aa	ENSP00000363607.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AK13	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374490.3	HMGCL-002	1600	325aa	ENSP00000363614.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS243	B1AK13 P35914	NM_000191.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436439.2	HMGCL-007	1354	254aa	ENSP00000389281.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53279	P35914	NM_001166059.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000235958.4	HMGCL-010	1101	182aa	ENSP00000235958.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000374487.2	HMGCL-001	2151	77aa	ENSP00000363611.2	Nonsense mediated decay		D6REN8	-	-
ENST00000509389.1	HMGCL-008	1379	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496907.1	HMGCL-006	858	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479458.1	HMGCL-003	594	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498698.1	HMGCL-004	463	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513148.1	HMGCL-009	2011	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 2,011 bps,

Version

ENST00000513148.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000372572 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000513148.1 HMGCL-009

Summary