Transcript: ENST00000497230.2 PRRX1-005

Description

paired related homeobox 1 [Source:HGNC Symbol;Acc:9142]

Gene Synonyms

AGOTC, PHOX1, PMX1, PRX-1, PRX1

Location

Chromosome 1: 170,633,078-170,698,162 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 9 domains and features, is associated with 29648 variant alleles and maps to 298 oligo probes.

Gene

This transcript is a product of gene ENSG00000116132.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000239461.6	PRRX1-002	4284	245aa	ENSP00000239461.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1290	P54821	NM_022716.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000497230.2	PRRX1-005	3501	200aa	ENSP00000450762.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2N3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367760.3	PRRX1-001	2217	217aa	ENSP00000356734.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1291	G3V2N3 P54821	NM_006902.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476867.2	PRRX1-003	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553786.1	PRRX1-008	529	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495280.1	PRRX1-004	464	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496573.1	PRRX1-006	362	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485529.1	PRRX1-007	329	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 3,501 bps, Translation length: 200 residues

Version

ENST00000497230.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000085437 (version 2)

Annotation Attributes

retained intron final [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000497230.2 PRRX1-005

Summary