Transcript: ENST00000409938.1 EPHA4-001

Description

EPH receptor A4 [Source:HGNC Symbol;Acc:3388]

Gene Synonyms

HEK8, Hek8, SEK, TYRO1

Location

Chromosome 2: 222,290,621-222,438,922 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 46 domains and features, is associated with 64970 variant alleles and maps to 602 oligo probes.

Gene

This transcript is a product of gene ENSG00000116106.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000281821.2	EPHA4-201	6346	986aa	ENSP00000281821.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2447	C9JEM6 C9JIX8 E9PG71 F5GZZ5 P54764 Q53TA0 Q584H6	NM_004438.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409854.1	EPHA4-003	3454	949aa	ENSP00000386276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEM6 C9JIX8 E9PG71 F5GZZ5 Q584H6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409938.1	EPHA4-001	3363	986aa	ENSP00000386829.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2447	C9JEM6 C9JIX8 E9PG71 F5GZZ5 P54764 Q53TA0 Q584H6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392071.4	EPHA4-202	3045	935aa	ENSP00000375923.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z6Q8 C9JEM6 Q53TA0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434266.1	EPHA4-004	617	91aa	ENSP00000404089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JIX8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000443796.1	EPHA4-012	584	177aa	ENSP00000395917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JFX5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000441679.1	EPHA4-006	565	188aa	ENSP00000401405.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000541600.1	EPHA4-002	558	149aa	ENSP00000444085.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JIX8 F5GZZ5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419964.1	EPHA4-005	552	126aa	ENSP00000410158.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEM6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000415749.1	EPHA4-013	545	38aa	ENSP00000391517.1	Nonsense mediated decay		F8WBU0	-	-
ENST00000424339.1	EPHA4-009	492	37aa	ENSP00000408145.1	Nonsense mediated decay		H7C2W7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000469354.1	EPHA4-014	2893	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472696.1	EPHA4-015	531	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495693.1	EPHA4-008	588	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463446.1	EPHA4-007	579	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 17, Transcript length: 3,363 bps, Translation length: 986 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P54764

CCDS

This transcript is a member of the Human CCDS set: CCDS2447

Version

ENST00000409938.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256836 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000409938.1 EPHA4-001

Summary