Transcript: ENST00000254351.4 SDC1-001

Description

syndecan 1 [Source:HGNC Symbol;Acc:10658]

Gene Synonyms

CD138, SDC, SYND1, syndecan

Location

About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 11509 variant alleles and maps to 508 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381150.1	SDC1-201	3291	310aa	ENSP00000370542.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1697	P18827	NM_001006946.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000254351.4	SDC1-001	3147	310aa	ENSP00000254351.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1697	P18827	NM_002997.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000403076.1	SDC1-002	1523	169aa	ENSP00000384613.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PHH3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429035.1	SDC1-005	646	215aa	ENSP00000400773.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C1K4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000447124.1	SDC1-004	591	28aa	ENSP00000390201.1	Nonsense mediated decay		F8WCX9	-	-
ENST00000482879.1	SDC1-003	1100	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 3,147 bps, Translation length: 310 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P18827

CCDS

This transcript is a member of the Human CCDS set: CCDS1697

Version

ENST00000254351.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000207495 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.