Transcript: ENST00000393808.3 ST3GAL5-002

Description

ST3 beta-galactoside alpha-2,3-sialyltransferase 5 [Source:HGNC Symbol;Acc:10872]

Gene Synonyms

SATI, SIAT9, SIATGM3S, ST3GalV

Location

Chromosome 2: 86,066,267-86,094,777 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 6 domains and features, is associated with 11201 variant alleles and maps to 364 oligo probes.

Gene

This transcript is a product of gene ENSG00000115525.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000377332.3	ST3GAL5-001	2366	418aa	ENSP00000366549.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1986	C9JYS9 Q9UNP4	NM_003896.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393805.1	ST3GAL5-003	2318	390aa	ENSP00000377394.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYS9 Q9UNP4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393808.3	ST3GAL5-002	2225	395aa	ENSP00000377397.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42705	C9JYS9 Q9UNP4	NM_001042437.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525834.2	ST3GAL5-201	989	220aa	ENSP00000433607.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V199	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455892.1	ST3GAL5-004	530	139aa	ENSP00000401375.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYS9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000306262.5	ST3GAL5-012	915	112aa	ENSP00000306247.5	Nonsense mediated decay		E7EPY0	-	-
ENST00000433665.1	ST3GAL5-006	640	47aa	ENSP00000408635.1	Nonsense mediated decay		F8WEA8	-	-
ENST00000484728.1	ST3GAL5-011	583	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461892.1	ST3GAL5-007	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487896.1	ST3GAL5-009	538	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461199.1	ST3GAL5-008	513	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473122.1	ST3GAL5-010	486	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490946.1	ST3GAL5-005	467	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461206.1	ST3GAL5-013	3487	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,225 bps, Translation length: 395 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UNP4

CCDS

This transcript is a member of the Human CCDS set: CCDS42705

Version

ENST00000393808.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252487 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000393808.3 ST3GAL5-002

Summary