Transcript: ENST00000431187.1 INO80B-007

Description

INO80 complex subunit B [Source:HGNC Symbol;Acc:13324]

Gene Synonyms

HMGA1L4, HMGIYL4, IES2, PAP-1BP, PAPA-1, PAPA1, ZNHIT4, hIes2

Location

Chromosome 2: 74,682,214-74,684,494 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 1161 variant alleles and maps to 481 oligo probes.

Gene

This transcript is a product of gene ENSG00000115274.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000233331.7	INO80B-001	1261	356aa	ENSP00000233331.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1942	B4DJ22 Q9C086	NM_031288.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409917.1	INO80B-006	796	184aa	ENSP00000387267.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZ93	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409493.2	INO80B-010	623	207aa	ENSP00000386937.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZH7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000431187.1	INO80B-007	559	176aa	ENSP00000389887.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JKY0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000452361.1	INO80B-002	2040	363aa	ENSP00000388677.1	Nonsense mediated decay		B4DJ22 J3KQ70	-	-
ENST00000441673.1	INO80B-003	1668	263aa	ENSP00000392498.1	Nonsense mediated decay		F8WCL7	-	-
ENST00000455562.1	INO80B-012	617	97aa	ENSP00000398740.1	Nonsense mediated decay		H7C171	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000469849.1	INO80B-011	689	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494986.1	INO80B-005	615	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471577.1	INO80B-004	818	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473618.1	INO80B-008	779	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 559 bps, Translation length: 176 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000431187.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000328416 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000431187.1 INO80B-007

Summary