Transcript: ABCC5-007 ENST00000437205.1

Description

ATP-binding cassette, sub-family C (CFTR/MRP), member 5 [Source:HGNC Symbol;Acc:56]

Gene Synonyms

ABC33, EST277145, MOAT-C, MOATC, MRP5, SMRP, pABC11

Location

Chromosome 3: 183,637,727-183,735,624 reverse strand.

About this transcript

This transcript has 30 exons, is annotated with 16 domains and features, is associated with 24591 variant alleles and maps to 870 oligo probes.

Gene

This transcript is a product of gene ENSG00000114770.12 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ABCC5-001	ENST00000334444.6	5921	1437aa	ENSP00000333926.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43176	C9JZL5 O15440	NM_005688 NP_005679	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ABCC5-005	ENST00000382494.2	1923	208aa	ENSP00000371934.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33898	C9JZL5 O15440	NM_001023587 NP_001018881	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ABCC5-006	ENST00000427120.2	4697	231aa	ENSP00000404809.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A5PKY6 C9JZL5	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ABCC5-201	ENST00000265586.6	4283	1394aa	ENSP00000265586.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	C9JZL5 Q86UX3	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ABCC5-004	ENST00000392579.2	1848	225aa	ENSP00000376358.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	C9JZL5 O15440	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ABCC5-002	ENST00000446941.2	883	53aa	ENSP00000390911.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	E9PET4 Q96BR0	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ABCC5-010	ENST00000437341.1	591	147aa	ENSP00000399726.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	C9JZL5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ABCC5-007	ENST00000437205.1	5852	473aa	ENSP00000403510.1	Nonsense mediated decay	-	C9JZL5 F8WCY8	-	-
ABCC5-003	ENST00000443376.1	2000	212aa	ENSP00000416840.1	Nonsense mediated decay	-	C9JZL5 O15440	-	-
ABCC5-009	ENST00000438979.2	821	53aa	ENSP00000409913.2	Nonsense mediated decay	-	F8WDH3	-	-
ABCC5-013	ENST00000443497.1	550	70aa	ENSP00000404302.1	Nonsense mediated decay	-	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ABCC5-011	ENST00000492216.1	954	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-	-
ABCC5-012	ENST00000476402.1	732	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-

Summary

Statistics

Exons: 30, Coding exons: 10, Transcript length: 5,852 bps, Translation length: 473 residues

Version

ENST00000437205.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000346356 (version 1)

Favourite species

All species

Recent locations

Transcript: ABCC5-007 ENST00000437205.1

Summary

Transcript-based displays