Transcript: ENST00000470455.1 ATP6V1A-002

Description

ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A [Source:HGNC Symbol;Acc:851]

Gene Synonyms

ATP6A1, ATP6V1A1, HO68, VA68, VPP2, Vma1

Location

Chromosome 3: 113,465,884-113,528,544 forward strand.

About this transcript

This transcript has 16 exons, is associated with 26410 variant alleles and maps to 583 oligo probes.

Gene

This transcript is a product of gene ENSG00000114573.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000273398.3	ATP6V1A-001	4591	617aa	ENSP00000273398.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2976	B7Z1R5 B7Z2V6 C9JA17 C9JVW8 P38606	NM_001690.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538620.1	ATP6V1A-201	2266	584aa	ENSP00000439874.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z1R5 B7Z2V6 C9JA17	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475322.1	ATP6V1A-005	754	221aa	ENSP00000419294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JA17 C9JVW8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000496747.1	ATP6V1A-006	710	184aa	ENSP00000417545.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JA17	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000470455.1	ATP6V1A-002	2266	49aa	ENSP00000420146.1	Nonsense mediated decay		F8WDJ3	-	-
ENST00000461496.1	ATP6V1A-007	542	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462855.1	ATP6V1A-004	509	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 3, Transcript length: 2,266 bps, Translation length: 49 residues

Version

ENST00000470455.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000354458 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000470455.1 ATP6V1A-002

Summary