Transcript: ENST00000512053.1 HMGCR-014

Description

3-hydroxy-3-methylglutaryl-CoA reductase [Source:HGNC Symbol;Acc:5006]

Gene Synonyms

LDLCQ3

Location

Chromosome 5: 74,655,742-74,656,354 forward strand.

About this transcript

This transcript has 2 exons, is associated with 288 variant alleles and maps to 201 oligo probes.

Gene

This transcript is a product of gene ENSG00000113161.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000287936.4	HMGCR-001	4585	888aa	ENSP00000287936.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4027	C9JKX7 D6RIW0 P04035	NM_000859.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000343975.5	HMGCR-004	3681	835aa	ENSP00000340816.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47234	C9JKX7 D6RIW0 P04035	NM_001130996.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511206.1	HMGCR-002	3395	888aa	ENSP00000426745.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4027	C9JKX7 D6RIW0 P04035	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509085.1	HMGCR-005	637	165aa	ENSP00000421378.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000507942.1	HMGCR-009	527	111aa	ENSP00000427340.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JKX7 D6RIW0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511986.1	HMGCR-006	487	115aa	ENSP00000420871.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y8F6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000442032.2	HMGCR-010	268	18aa	ENSP00000409100.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JKX7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000504466.1	HMGCR-007	1107	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000514315.2	HMGCR-013	603	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000515776.1	HMGCR-012	501	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512053.1	HMGCR-014	465	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508070.1	HMGCR-011	450	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509431.1	HMGCR-008	421	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 465 bps,

Version

ENST00000512053.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000369031 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000512053.1 HMGCR-014

Summary