Transcript: ENST00000426155.2 SNX3-004

Description

sorting nexin 3 [Source:HGNC Symbol;Acc:11174]

Gene Synonyms

Grd19, MCOPS8, SDP3

Location

About this transcript

This transcript has 3 exons, is annotated with 7 domains and features, is associated with 21929 variant alleles and maps to 500 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000230085.8	SNX3-001	1755	162aa	ENSP00000230085.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5064	O60493	NM_003795.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426155.2	SNX3-004	1072	130aa	ENSP00000401779.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5065	O60493	NM_152827.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000349379.5	SNX3-003	890	140aa	ENSP00000296991.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O60493	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368982.4	SNX3-201	681	113aa	ENSP00000357978.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O60493	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368979.2	SNX3-002	1537	113aa	ENSP00000357975.2	Nonsense mediated decay		O60493	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,072 bps, Translation length: 130 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O60493

CCDS

This transcript is a member of the Human CCDS set: CCDS5065

Version

ENST00000426155.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000110400 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.