Transcript: ENST00000508399.1 MDGA1-008

Description

MAM domain containing glycosylphosphatidylinositol anchor 1 [Source:HGNC Symbol;Acc:19267]

Gene Synonyms

GPIM, MAMDC3

Location

Chromosome 6: 37,623,656-37,632,092 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 7 domains and features, is associated with 3706 variant alleles and maps to 85 oligo probes.

Gene

This transcript is a product of gene ENSG00000112139.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000297153.7	MDGA1-201	8919	959aa	ENSP00000297153.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RFG6 D6RHU8 J3KNB7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434837.3	MDGA1-001	8898	955aa	ENSP00000402584.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47417	D6RFG6 D6RHU8 Q8NFP4	NM_153487.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505425.1	MDGA1-003	3021	973aa	ENSP00000422042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RFG6 D6RHU8 Q8NFP4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515437.1	MDGA1-007	594	129aa	ENSP00000421510.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RFG6 D6RHU8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000508399.1	MDGA1-008	542	77aa	ENSP00000427645.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RHU8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000418178.2	MDGA1-012	478	159aa	ENSP00000393330.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000502298.1	MDGA1-010	582	87aa	ENSP00000425911.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000510077.1	MDGA1-009	655	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503419.1	MDGA1-011	201	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000373401.2	MDGA1-005	5120	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478143.2	MDGA1-002	2430	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 542 bps, Translation length: 77 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000508399.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000370514 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000508399.1 MDGA1-008

Summary