Transcript: ENST00000379446.5 NEDD9-001

Description

neural precursor cell expressed, developmentally down-regulated 9 [Source:HGNC Symbol;Acc:7733]

Gene Synonyms

CAS-L, CAS2, CASL, CASS2, HEF1

Location

Chromosome 6: 11,183,531-11,232,915 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 12 domains and features, is associated with 20175 variant alleles and maps to 483 oligo probes.

Gene

This transcript is a product of gene ENSG00000111859.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379446.5	NEDD9-001	4536	834aa	ENSP00000368759.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4520	D6RGD7 Q14511	NM_006403.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379433.5	NEDD9-003	3341	174aa	ENSP00000368745.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34340	D6RGD7 Q14511	NM_182966.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504387.1	NEDD9-002	3211	834aa	ENSP00000422871.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47373	D6RBQ2 D6RGD7 Q14511	NM_001142393.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513989.1	NEDD9-014	587	29aa	ENSP00000421282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGD7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000508546.1	NEDD9-007	581	22aa	ENSP00000424975.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6REP7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000397378.3	NEDD9-010	470	32aa	ENSP00000380534.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBQ2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000448183.2	NEDD9-008	4934	43aa	ENSP00000395237.2	Nonsense mediated decay		D6RDV1	-	-
ENST00000508800.1	NEDD9-009	834	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504634.1	NEDD9-012	745	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000459670.2	NEDD9-006	614	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461055.2	NEDD9-004	592	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468612.1	NEDD9-005	809	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512665.1	NEDD9-013	761	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505589.1	NEDD9-015	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000514660.1	NEDD9-011	473	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 4,536 bps, Translation length: 834 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14511

CCDS

This transcript is a member of the Human CCDS set: CCDS4520

Version

ENST00000379446.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000039853 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000379446.5 NEDD9-001

Summary