Transcript: ENST00000538172.1 FGFR1OP2-003

Description

FGFR1 oncogene partner 2 [Source:HGNC Symbol;Acc:23098]

Gene Synonyms

DKFZp564O1863, HSPC123-like, WIT3.0

Location

Chromosome 12: 27,113,929-27,118,013 forward strand.

About this transcript

This transcript has 2 exons, is associated with 1583 variant alleles and maps to 343 oligo probes.

Gene

This transcript is a product of gene ENSG00000111790.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000229395.3	FGFR1OP2-001	2924	253aa	ENSP00000229395.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8709	F5GX47 Q9NVK5	NM_015633.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000327214.5	FGFR1OP2-004	2790	215aa	ENSP00000323763.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53767	F5GX47 Q9NVK5	NM_001171887.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546072.1	FGFR1OP2-002	956	172aa	ENSP00000437556.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53766	F5GX47 Q9NVK5	NM_001171888.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544111.1	FGFR1OP2-005	582	60aa	ENSP00000441144.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GX47	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000538172.1	FGFR1OP2-003	2945	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000395941.4	FGFR1OP2-006	865	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 2,945 bps,

Version

ENST00000538172.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000402966 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000538172.1 FGFR1OP2-003

Summary