Transcript: ENST00000435070.2 CPSF6-001

Description

cleavage and polyadenylation specific factor 6, 68kDa [Source:HGNC Symbol;Acc:13871]

Gene Synonyms

CFIM, CFIM68, HPBRII-4, HPBRII-7

Location

Chromosome 12: 69,633,317-69,668,138 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 11 domains and features, is associated with 16420 variant alleles and maps to 692 oligo probes.

Gene

This transcript is a product of gene ENSG00000111605.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000435070.2	CPSF6-001	6616	551aa	ENSP00000391774.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8988	Q16630	NM_007007.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000266679.8	CPSF6-004	2229	588aa	ENSP00000266679.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q16630	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456847.3	CPSF6-003	1915	478aa	ENSP00000391437.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WJN3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551516.1	CPSF6-006	234	56aa	ENSP00000450206.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VNP8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550075.1	CPSF6-005	540	107aa	ENSP00000446670.1	Nonsense mediated decay		F8W084	-	-
ENST00000550987.1	CPSF6-008	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547486.1	CPSF6-007	872	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 6,616 bps, Translation length: 551 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q16630

CCDS

This transcript is a member of the Human CCDS set: CCDS8988

Version

ENST00000435070.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000403609 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000435070.2 CPSF6-001

Summary