Transcript: ENST00000535718.1 NUP107-002

Description

nucleoporin 107kDa [Source:HGNC Symbol;Acc:29914]

Gene Synonyms

NUP84

Location

Chromosome 12: 69,080,786-69,136,468 forward strand.

About this transcript

This transcript has 25 exons, is annotated with 1 domain and feature, is associated with 23079 variant alleles and maps to 624 oligo probes.

Gene

This transcript is a product of gene ENSG00000111581.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000229179.4	NUP107-001	3653	925aa	ENSP00000229179.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8985	F5GY77 P57740	NM_020401.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539906.1	NUP107-003	3004	896aa	ENSP00000441448.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DZ67 F5GY77	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378905.2	NUP107-201	2650	686aa	ENSP00000368185.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6PJE1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538549.1	NUP107-005	678	85aa	ENSP00000440116.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GY77	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535718.1	NUP107-002	2655	103aa	ENSP00000445567.1	Nonsense mediated decay		G3V1T4	-	-
ENST00000538993.1	NUP107-010	836	80aa	ENSP00000441334.1	Nonsense mediated decay		H0YG15	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000401003.3	NUP107-011	729	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000537598.1	NUP107-007	695	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000535333.1	NUP107-006	683	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000537662.1	NUP107-009	825	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540453.1	NUP107-004	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000545140.1	NUP107-008	516	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000539373.1	NUP107-012	278	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 25, Coding exons: 5, Transcript length: 2,655 bps, Translation length: 103 residues

Version

ENST00000535718.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000403199 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000535718.1 NUP107-002

Summary