Transcript: ENST00000448789.2 RAB5B-003

Description

RAB5B, member RAS oncogene family [Source:HGNC Symbol;Acc:9784]

Location

Chromosome 12: 56,367,885-56,386,870 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 15 domains and features, is associated with 8208 variant alleles and maps to 288 oligo probes.

Gene

This transcript is a product of gene ENSG00000111540.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000360299.5	RAB5B-001	3362	215aa	ENSP00000353444.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8900	F8VUA5 F8VVZ0 P61020	NM_002868.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553116.1	RAB5B-004	3322	215aa	ENSP00000450168.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8900	F8VUA5 F8VVZ0 P61020	NM_001252036.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448789.2	RAB5B-003	1530	174aa	ENSP00000391319.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58244	F8VVZ0 P61020	NM_001252037.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548068.1	RAB5B-005	596	115aa	ENSP00000447895.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VUA5 F8VVZ0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551459.1	RAB5B-007	569	100aa	ENSP00000449554.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVZ0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000549915.1	RAB5B-006	494	79aa	ENSP00000449762.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VWZ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000549505.1	RAB5B-002	3148	73aa	ENSP00000450285.1	Nonsense mediated decay		F8VPW9	-	-
ENST00000550283.1	RAB5B-010	665	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000546810.1	RAB5B-008	589	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549034.1	RAB5B-009	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,530 bps, Translation length: 174 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P61020

CCDS

This transcript is a member of the Human CCDS set: CCDS58244

Version

ENST00000448789.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000405402 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000448789.2 RAB5B-003

Summary