Transcript: ENST00000550325.1 VDR-002

Description

vitamin D (1,25- dihydroxyvitamin D3) receptor [Source:HGNC Symbol;Acc:12679]

Gene Synonyms

NR1I1

Location

Chromosome 12: 48,236,411-48,298,786 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 30 domains and features, is associated with 28124 variant alleles and maps to 639 oligo probes.

Gene

This transcript is a product of gene ENSG00000111424.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000229022.3	VDR-201	4773	427aa	ENSP00000229022.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8757	F1D8P8 F8VPF8 F8VRJ4 F8VVY8 F8VXQ9 P11473 Q6T928 T1WSQ6	NM_001017535.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395324.2	VDR-001	4762	427aa	ENSP00000378734.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8757	F1D8P8 F8VPF8 F8VRJ4 F8VVY8 F8VXQ9 P11473 Q6T928 T1WSQ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550325.1	VDR-002	3925	477aa	ENSP00000447173.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55820	F1D8P8 F8VPF8 F8VRJ4 F8VVY8 F8VXQ9 P11473 Q6T928 T1WSQ6	NM_001017536.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549336.1	VDR-004	3554	427aa	ENSP00000449573.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8757	F1D8P8 F8VPF8 F8VRJ4 F8VVY8 F8VXQ9 P11473 Q6T928 T1WSQ6	NM_000376.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535672.1	VDR-202	1782	395aa	ENSP00000442145.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DRV7 Q6T928 T1WSQ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546653.1	VDR-007	937	250aa	ENSP00000448659.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VPF8 F8VRJ4 F8VVY8 F8VXQ9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000548664.1	VDR-006	596	101aa	ENSP00000450105.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VPF8 F8VXQ9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550314.1	VDR-008	562	106aa	ENSP00000449561.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VPF8 F8VVY8 F8VXQ9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547065.1	VDR-003	1782	49aa	ENSP00000449074.1	Nonsense mediated decay		F8VXQ9	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 3,925 bps, Translation length: 477 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P11473

CCDS

This transcript is a member of the Human CCDS set: CCDS55820

Version

ENST00000550325.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000406435 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000550325.1 VDR-002

Summary