Transcript: ENST00000543341.2 GTF2H3-001

Description

general transcription factor IIH, polypeptide 3, 34kDa [Source:HGNC Symbol;Acc:4657]

Gene Synonyms

BTF2, P34, TFB4, TFIIH

Location

Chromosome 12: 124,118,376-124,147,153 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 5 domains and features, is associated with 12188 variant alleles and maps to 554 oligo probes.

Gene

This transcript is a product of gene ENSG00000111358.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000543341.2	GTF2H3-001	3329	308aa	ENSP00000445162.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9252	B4DNZ6 Q13889	NM_001516.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000228955.7	GTF2H3-002	1472	267aa	ENSP00000228955.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61275	B4DNZ6	NM_001271867.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536375.1	GTF2H3-011	790	258aa	ENSP00000441894.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GWD3	NM_001271866.1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000538845.1	GTF2H3-003	663	210aa	ENSP00000446097.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4K7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543154.1	GTF2H3-008	582	194aa	ENSP00000438435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YFF7	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000539994.1	GTF2H3-004	562	177aa	ENSP00000446429.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXG6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000538533.1	GTF2H3-013	555	148aa	ENSP00000442977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H6X0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543415.1	GTF2H3-012	907	200aa	ENSP00000440482.1	Nonsense mediated decay		F5GX35	-	-
ENST00000542279.1	GTF2H3-007	552	67aa	ENSP00000439121.1	Nonsense mediated decay		F5H3G1	-	-
ENST00000539429.1	GTF2H3-014	858	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000543005.1	GTF2H3-006	585	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000537695.1	GTF2H3-010	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000537368.1	GTF2H3-009	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 3,329 bps, Translation length: 308 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13889

CCDS

This transcript is a member of the Human CCDS set: CCDS9252

Version

ENST00000543341.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000400641 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000543341.2 GTF2H3-001

Summary