Transcript: ENST00000550558.1 ASIC1-003

Description

acid-sensing (proton-gated) ion channel 1 [Source:HGNC Symbol;Acc:100]

Gene Synonyms

ACCN2, ASIC, BNAC2, BNaC2, hBNaC2

Location

Chromosome 12: 50,451,528-50,477,394 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 9 domains and features, is associated with 10991 variant alleles and maps to 659 oligo probes.

Gene

This transcript is a product of gene ENSG00000110881.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000228468.4	ASIC1-001	4072	574aa	ENSP00000228468.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8796	P78348	NM_020039.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447966.2	ASIC1-002	3778	528aa	ENSP00000400228.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44876	P78348	NM_001095.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552438.1	ASIC1-009	3327	562aa	ENSP00000450247.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58228	P78348	NM_001256830.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453327.3	ASIC1-007	1481	396aa	ENSP00000402896.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000552633.2	ASIC1-008	614	127aa	ENSP00000446863.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000550558.1	ASIC1-003	3819	263aa	ENSP00000448263.1	Nonsense mediated decay		F8VSK4	-	-
ENST00000551199.1	ASIC1-004	1223	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548350.1	ASIC1-006	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549792.1	ASIC1-005	350	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 5, Transcript length: 3,819 bps, Translation length: 263 residues

Version

ENST00000550558.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000406005 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000550558.1 ASIC1-003

Summary