Transcript: ENST00000341398.2 PVRL1-001

Description

poliovirus receptor-related 1 (herpesvirus entry mediator C) [Source:HGNC Symbol;Acc:9706]

Gene Synonyms

CD111, CLPED1, ED4, HIgR, HVEC, OFC7, PRR, PRR1, PVRR, PVRR1, SK-12, nectin-1

Location

Chromosome 11: 119,508,808-119,599,263 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 24 domains and features, is associated with 40281 variant alleles and maps to 339 oligo probes.

Gene

This transcript is a product of gene ENSG00000110400.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264025.3	PVRL1-002	5840	517aa	ENSP00000264025.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8426	Q15223 Q6SYC2	NM_002855.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000341398.2	PVRL1-001	1377	458aa	ENSP00000344974.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8425	Q15223 Q6SYC0 Q6SYC2	NM_203285.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000340882.2	PVRL1-003	1059	352aa	ENSP00000345289.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8427	Q15223 Q6SYC2	NM_203286.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524510.1	PVRL1-004	832	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531468.1	PVRL1-007	589	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000524429.2	PVRL1-005	777	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000532197.1	PVRL1-006	452	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,377 bps, Translation length: 458 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15223

CCDS

This transcript is a member of the Human CCDS set: CCDS8425

Version

ENST00000341398.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000388230 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000341398.2 PVRL1-001

Summary