Transcript: ENST00000264431.4 RAPGEF2-001

Description

Rap guanine nucleotide exchange factor (GEF) 2 [Source:HGNC Symbol;Acc:16854]

Gene Synonyms

CNrasGEF, DKFZP586O1422, KIAA0313, NRAPGEP, PDZ-GEF1, PDZGEF1, RA-GEF, RA-GEF-1, Rap-GEP, nRap GEP

Location

Chromosome 4: 160,188,889-160,281,321 forward strand.

About this transcript

This transcript has 24 exons, is annotated with 36 domains and features, is associated with 40627 variant alleles and maps to 875 oligo probes.

Gene

This transcript is a product of gene ENSG00000109756.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264431.4	RAPGEF2-001	6949	1499aa	ENSP00000264431.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43277	B4DG82 D6REY8 Q17RH5 Q4W5Q4 Q9UFT5 Q9Y4G8	NM_014247.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505026.1	RAPGEF2-011	970	324aa	ENSP00000427334.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000505478.1	RAPGEF2-003	838	279aa	ENSP00000422707.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y905	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000510253.1	RAPGEF2-010	796	265aa	ENSP00000421083.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000512056.1	RAPGEF2-013	723	189aa	ENSP00000421624.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514565.1	RAPGEF2-006	596	154aa	ENSP00000422361.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RC78	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511336.1	RAPGEF2-007	582	116aa	ENSP00000421602.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6REY8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510510.1	RAPGEF2-008	562	155aa	ENSP00000421740.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAK0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000502485.1	RAPGEF2-009	545	182aa	ENSP00000422098.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000504604.1	RAPGEF2-004	693	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503328.1	RAPGEF2-005	433	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513816.1	RAPGEF2-002	3670	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509891.1	RAPGEF2-012	537	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 24, Transcript length: 6,949 bps, Translation length: 1,499 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y4G8

CCDS

This transcript is a member of the Human CCDS set: CCDS43277

Version

ENST00000264431.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000364980 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000264431.4 RAPGEF2-001

Summary