Transcript: ENST00000513285.1 SEPSECS-004

Description

Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase [Source:HGNC Symbol;Acc:30605]

Gene Synonyms

LP, PCH2D, SLA, SLA/LP, TRNP48

Location

Chromosome 4: 25,160,567-25,162,020 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 920 variant alleles and maps to 90 oligo probes.

Gene

This transcript is a product of gene ENSG00000109618.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000382103.2	SEPSECS-001	5496	501aa	ENSP00000371535.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3432	A1A4F3 Q9HD40	NM_016955.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000302922.3	SEPSECS-201	5490	422aa	ENSP00000305956.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9HD40	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513285.1	SEPSECS-004	561	177aa	ENSP00000423361.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R969	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000358971.3	SEPSECS-003	3344	112aa	ENSP00000351857.3	Nonsense mediated decay		J3KP25	-	-
ENST00000514585.1	SEPSECS-002	1494	47aa	ENSP00000421880.1	Nonsense mediated decay		Q9HD40	-	-
ENST00000503150.1	SEPSECS-006	544	95aa	ENSP00000423850.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000515272.1	SEPSECS-007	529	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505513.1	SEPSECS-005	420	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 561 bps, Translation length: 177 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000513285.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000361133 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000513285.1 SEPSECS-004

Summary