Transcript: ENST00000507689.1 COL1A1-013

Description

collagen, type I, alpha 1 [Source:HGNC Symbol;Acc:2197]

Gene Synonyms

OI4

Location

Chromosome 17: 48,276,650-48,277,552 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 11 domains and features, is associated with 753 variant alleles and maps to 111 oligo probes.

Gene

This transcript is a product of gene ENSG00000108821.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000225964.5	COL1A1-001	6727	1464aa	ENSP00000225964.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11561	P02452 Q6LAN8 Q9UMA6	NM_000088.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507689.1	COL1A1-013	549	154aa	ENSP00000460459.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L3H7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000471344.1	COL1A1-006	1192	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000510710.3	COL1A1-018	1147	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486572.1	COL1A1-009	836	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000511732.1	COL1A1-016	789	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474644.1	COL1A1-002	640	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463440.1	COL1A1-005	614	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476387.1	COL1A1-007	600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495677.1	COL1A1-003	594	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504289.1	COL1A1-014	481	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485870.1	COL1A1-004	403	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494334.1	COL1A1-008	396	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 549 bps, Translation length: 154 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000507689.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000366880 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000507689.1 COL1A1-013

Summary