Transcript: ENST00000550504.1 RAB5C-004

Description

RAB5C, member RAS oncogene family [Source:HGNC Symbol;Acc:9785]

Gene Synonyms

L1880, RAB5CL, RAB5L, RABL

Location

Chromosome 17: 40,280,710-40,288,502 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 12 domains and features, is associated with 3166 variant alleles and maps to 126 oligo probes.

Gene

This transcript is a product of gene ENSG00000108774.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393860.3	RAB5C-201	1771	216aa	ENSP00000377440.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11419	F8VSF8 F8VVK3 F8VWU4 K7EIP6 P51148	NM_201434.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000346213.4	RAB5C-001	1671	216aa	ENSP00000345689.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11419	F8VSF8 F8VVK3 F8VWU4 K7EIP6 P51148	NM_004583.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547517.1	RAB5C-002	1167	249aa	ENSP00000447053.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58551	F8VSF8 F8VVK3 F8VWU4 K7EIP6 P51148	NM_001252039.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550504.1	RAB5C-004	583	91aa	ENSP00000449777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VSF8 F8VWU4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551338.1	RAB5C-006	560	150aa	ENSP00000467144.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENY4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000552162.1	RAB5C-005	551	124aa	ENSP00000449612.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VSF8 F8VVK3 F8VWU4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550406.1	RAB5C-008	500	74aa	ENSP00000448314.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VSF8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546881.1	RAB5C-007	608	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000550013.1	RAB5C-003	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 583 bps, Translation length: 91 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000550504.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000405514 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000550504.1 RAB5C-004

Summary