Transcript: ENST00000225742.9 SMARCD2-002

Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Source:HGNC Symbol;Acc:11107]

Gene Synonyms

BAF60B, CRACD2, PRO2451, Rsc6p

Location

Chromosome 17: 61,909,964-61,919,826 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 10 domains and features, is associated with 4731 variant alleles and maps to 463 oligo probes.

Gene

This transcript is a product of gene ENSG00000108604.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000448276.2	SMARCD2-001	2716	531aa	ENSP00000392617.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45756	J3KMX2 J3KT18 Q92925	NM_001098426.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000323347.10	SMARCD2-003	1935	483aa	ENSP00000318451.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KMX2 Q92925	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000225742.9	SMARCD2-002	1800	456aa	ENSP00000225742.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KMX2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450364.3	SMARCD2-012	993	231aa	ENSP00000398946.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000577990.1	SMARCD2-005	449	69aa	ENSP00000462761.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT18	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584400.1	SMARCD2-006	1017	80aa	ENSP00000464503.1	Nonsense mediated decay		J3KT18 J3QS33	-	-
ENST00000580054.1	SMARCD2-007	477	109aa	ENSP00000463793.1	Nonsense mediated decay		J3QQL7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000584483.1	SMARCD2-010	821	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000578234.1	SMARCD2-009	595	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000581832.1	SMARCD2-011	562	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577686.1	SMARCD2-008	394	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 1,800 bps, Translation length: 456 residues

Version

ENST00000225742.9

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000444547 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000225742.9 SMARCD2-002

Summary