Transcript: ENST00000394149.3 CSF3-003

Description

colony stimulating factor 3 (granulocyte) [Source:HGNC Symbol;Acc:2438]

Gene Synonyms

C17orf33, CSF3OS, G-CSF, GCSF, MGC45931

Location

Chromosome 17: 38,171,614-38,174,066 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 12 domains and features, is associated with 1321 variant alleles and maps to 410 oligo probes.

Gene

This transcript is a product of gene ENSG00000108342.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331769.2	CSF3-002	1673	200aa	ENSP00000327766.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8N4W3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394149.3	CSF3-003	1583	204aa	ENSP00000377705.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42314	P09919 Q6FH65	NM_172219.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000225474.2	CSF3-001	1509	207aa	ENSP00000225474.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11357	P09919	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577675.1	CSF3-006	1360	164aa	ENSP00000462991.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D7RVA3 J3KTH8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394148.3	CSF3-004	622	171aa	ENSP00000377704.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11358	P09919	NM_172220.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000583218.1	CSF3-008	579	155aa	ENSP00000464421.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QRX2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000579852.1	CSF3-007	1288	57aa	ENSP00000464157.1	Nonsense mediated decay		J3QRD4	-	-
ENST00000479880.1	CSF3-005	947	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000582798.1	CSF3-009	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,583 bps, Translation length: 204 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P09919

CCDS

This transcript is a member of the Human CCDS set: CCDS42314

Version

ENST00000394149.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256990 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000394149.3 CSF3-003

Summary