Transcript: ENST00000471521.1 PTGDS-002

Description

prostaglandin D2 synthase 21kDa (brain) [Source:HGNC Symbol;Acc:9592]

Gene Synonyms

L-PGDS, LPGDS, PDS, PGD2, PGDS, PGDS2

Location

Chromosome 9: 139,871,970-139,879,887 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 16 domains and features, is associated with 4675 variant alleles and maps to 503 oligo probes.

Gene

This transcript is a product of gene ENSG00000107317.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371625.3	PTGDS-001	807	190aa	ENSP00000360687.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7019	P41222	NM_000954.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371623.3	PTGDS-004	921	160aa	ENSP00000360685.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SQ12	-	-
ENST00000224167.2	PTGDS-201	913	224aa	ENSP00000224167.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W7I2 Q5SQ11	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446677.1	PTGDS-005	754	213aa	ENSP00000397468.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000457950.1	PTGDS-003	661	195aa	ENSP00000392633.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SQ11	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000444903.1	PTGDS-008	369	62aa	ENSP00000392692.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000471521.1	PTGDS-002	989	190aa	ENSP00000435033.1	Nonsense mediated decay	CCDS7019	P41222	-	-
ENST00000460340.1	PTGDS-006	616	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462514.1	PTGDS-007	593	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492068.1	PTGDS-010	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467871.1	PTGDS-009	183	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 6, Transcript length: 989 bps, Translation length: 190 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P41222

CCDS

This transcript is a member of the Human CCDS set: CCDS7019

Version

ENST00000471521.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000055189 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000471521.1 PTGDS-002

Summary