Transcript: ENST00000404008.2 USP42-004

Description

ubiquitin specific peptidase 42 [Source:HGNC Symbol;Acc:20068]

Gene Synonyms

FLJ12697

Location

About this transcript

This transcript has 12 exons, is annotated with 7 domains and features, is associated with 23280 variant alleles and maps to 330 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000306177.5	USP42-005	5155	1316aa	ENSP00000301962.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47535	C9JPC9 E5RJP3 Q9H9J4	NM_032172.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426246.2	USP42-006	3611	1043aa	ENSP00000408217.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JPC9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465073.2	USP42-008	1490	475aa	ENSP00000430568.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EWZ4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521713.1	USP42-009	5017	219aa	ENSP00000431127.1	Nonsense mediated decay		E5RJP3	-	-
ENST00000404008.2	USP42-004	1380	174aa	ENSP00000385964.2	Nonsense mediated decay		B4DP25	-	-
ENST00000451154.1	USP42-003	520	98aa	ENSP00000416910.1	Nonsense mediated decay		F8WD92	-	-
ENST00000479544.2	USP42-007	4286	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 3, Transcript length: 1,380 bps, Translation length: 174 residues

Version

ENST00000404008.2

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000324261 (version 2)