Transcript: ENST00000539908.2 TJP3-003

Description

tight junction protein 3 [Source:HGNC Symbol;Acc:11829]

Gene Synonyms

ZO-3, ZO3

Location

Chromosome 19: 3,708,501-3,750,808 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 42 domains and features, is associated with 23340 variant alleles and maps to 522 oligo probes.

Gene

This transcript is a product of gene ENSG00000105289.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000541714.2	TJP3-002	3350	919aa	ENSP00000439278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32873	F5H2X0 F5H4S9	NM_001267560.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382008.3	TJP3-202	3110	933aa	ENSP00000371438.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O95049	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589378.1	TJP3-004	3068	928aa	ENSP00000465419.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59332	F5H2X0 F5H4S9 O95049	NM_001267561.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587686.1	TJP3-001	2946	938aa	ENSP00000467864.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2X0 F5H4S9 O95049	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539908.2	TJP3-003	2897	883aa	ENSP00000439991.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4S9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000262968.9	TJP3-201	2859	952aa	ENSP00000262968.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O95049	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590545.1	TJP3-005	580	123aa	ENSP00000468641.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ESC0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586032.1	TJP3-008	680	59aa	ENSP00000465065.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000587641.1	TJP3-009	337	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000591493.1	TJP3-007	856	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587912.1	TJP3-006	721	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 19, Transcript length: 2,897 bps, Translation length: 883 residues

Version

ENST00000539908.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000453436 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000539908.2 TJP3-003

Summary