Transcript: ENST00000594092.1 VRK3-004

Description

vaccinia related kinase 3 [Source:HGNC Symbol;Acc:18996]

Location

Chromosome 19: 50,484,957-50,528,584 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 9 domains and features, is associated with 21252 variant alleles and maps to 416 oligo probes.

Gene

This transcript is a product of gene ENSG00000105053.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000599538.1	VRK3-009	2126	474aa	ENSP00000469880.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12791	M0QXD7 M0QYA8 M0QZ79 M0R025 Q8IV63	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000593919.1	VRK3-008	1979	406aa	ENSP00000469710.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QXD7 M0QYA8 M0QZ79 M0R025	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000316763.3	VRK3-001	1938	474aa	ENSP00000324636.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12791	M0QXD7 M0QYA8 M0QZ79 M0R025 Q8IV63	NM_016440.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000594948.1	VRK3-007	1847	474aa	ENSP00000473171.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12791	M0QXD7 M0QYA8 M0QZ79 M0R025 Q8IV63	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000594092.1	VRK3-004	1831	412aa	ENSP00000472541.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QXD7 M0QYA8 M0QZ79 M0R025 Q8IV63	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000601341.1	VRK3-006	1777	424aa	ENSP00000470156.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33076	Q8IV63	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377011.2	VRK3-002	1749	424aa	ENSP00000366210.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33076	Q8IV63	NM_001025778.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443401.2	VRK3-201	1736	243aa	ENSP00000414907.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DGW1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000601912.1	VRK3-005	1668	362aa	ENSP00000471061.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R073	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000596445.1	VRK3-022	840	169aa	ENSP00000469092.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QXD7 M0QZ79	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000597215.1	VRK3-017	836	182aa	ENSP00000470940.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QXD7 M0QZ79 M0R025	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000600137.1	VRK3-016	822	177aa	ENSP00000468979.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QX88	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000600259.1	VRK3-019	572	150aa	ENSP00000469400.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QXV1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000601324.1	VRK3-014	552	112aa	ENSP00000470359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZ79	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000593912.1	VRK3-021	551	117aa	ENSP00000473222.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R3H2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000596814.1	VRK3-003	1736	197aa	ENSP00000472217.1	Nonsense mediated decay		M0R200	-	-
ENST00000594090.1	VRK3-013	1448	72aa	ENSP00000469325.1	Nonsense mediated decay		M0R164	-	-
ENST00000596121.1	VRK3-026	983	247aa	ENSP00000469802.1	Nonsense mediated decay		M0QXD7 M0QYG0 M0QZ79 M0R025	-	-
ENST00000599342.1	VRK3-015	795	72aa	ENSP00000471661.1	Nonsense mediated decay		M0R164	-	-
ENST00000424804.2	VRK3-012	1061	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000600284.1	VRK3-023	768	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000599138.1	VRK3-018	503	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000594104.1	VRK3-011	2197	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000600031.1	VRK3-010	2110	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000601849.1	VRK3-024	653	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000598553.1	VRK3-020	595	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602029.1	VRK3-025	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 11, Transcript length: 1,831 bps, Translation length: 412 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IV63

Version

ENST00000594092.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000464820 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000594092.1 VRK3-004

Summary