Transcript: ENST00000558227.1 EIF3J-005

Description

eukaryotic translation initiation factor 3, subunit J [Source:HGNC Symbol;Acc:3270]

Gene Synonyms

EIF3S1, eIF3-alpha, eIF3-p35, eIF3j

Location

Chromosome 15: 44,842,881-44,846,772 forward strand.

About this transcript

This transcript has 3 exons, is associated with 1837 variant alleles and maps to 59 oligo probes.

Gene

This transcript is a product of gene ENSG00000104131.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261868.5	EIF3J-001	2569	258aa	ENSP00000261868.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10111	O75822	NM_003758.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424492.3	EIF3J-003	1550	209aa	ENSP00000414548.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61613	F5H425	NM_001284336.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535391.1	EIF3J-002	925	204aa	ENSP00000440221.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61612	B4DUI3	NM_001284335.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536248.1	EIF3J-004	533	106aa	ENSP00000443563.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558353.1	EIF3J-007	1024	117aa	ENSP00000453282.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558053.1	EIF3J-006	463	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558227.1	EIF3J-005	362	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 362 bps,

Version

ENST00000558227.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000415583 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000558227.1 EIF3J-005

Summary