Transcript: ENST00000543881.1 GABPB1-006

Description

GA binding protein transcription factor, beta subunit 1 [Source:HGNC Symbol;Acc:4074]

Gene Synonyms

BABPB2, E4TF1, E4TF1-47, E4TF1-53, E4TF1B, GABPB, GABPB2, NRF2B1, NRF2B2

Location

Chromosome 15: 50,570,599-50,647,321 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 14 domains and features, is associated with 33670 variant alleles and maps to 328 oligo probes.

Gene

This transcript is a product of gene ENSG00000104064.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380877.3	GABPB1-001	3016	383aa	ENSP00000370259.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10135	H0YNZ0 Q06547	NM_016654.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000220429.8	GABPB1-005	2726	395aa	ENSP00000220429.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32239	F5H7I4 H0YNZ0 Q06547	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359031.4	GABPB1-201	1633	348aa	ENSP00000351923.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10136	H0YNZ0 Q06547	NM_181427.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543881.1	GABPB1-006	1450	319aa	ENSP00000442500.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7I4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560825.1	GABPB1-007	1412	347aa	ENSP00000453463.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YNZ0 H9ZYI9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396464.3	GABPB1-002	1401	348aa	ENSP00000379728.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10136	H0YNZ0 Q06547	NM_016655.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429662.2	GABPB1-004	1392	360aa	ENSP00000395771.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45258	H0YNZ0 Q06547	NM_002041.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561010.1	GABPB1-012	867	203aa	ENSP00000453806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558970.1	GABPB1-008	730	89aa	ENSP00000454211.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YNZ0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000558335.1	GABPB1-009	406	89aa	ENSP00000453578.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YNZ0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559100.1	GABPB1-010	290	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,450 bps, Translation length: 319 residues

Version

ENST00000543881.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000418295 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000543881.1 GABPB1-006

Summary