Transcript: ENST00000567811.1 SMPD3-009

Description

sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II) [Source:HGNC Symbol;Acc:14240]

Gene Synonyms

NSMASE2

Location

Chromosome 16: 68,398,483-68,404,934 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 3489 variant alleles and maps to 90 oligo probes.

Gene

This transcript is a product of gene ENSG00000103056.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000219334.5	SMPD3-001	5450	655aa	ENSP00000219334.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10867	C8CHW6 D6Q0F1 H3BTM0 Q9NY59	NM_018667.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563226.1	SMPD3-002	2093	647aa	ENSP00000455955.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZL82 C8CHW6 H3BTM0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000568373.1	SMPD3-003	2073	638aa	ENSP00000457422.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C8CHW6 D6Q0F1 H3BS51 H3BTM0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574662.1	SMPD3-014	1755	207aa	ENSP00000459317.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561749.1	SMPD3-012	627	93aa	ENSP00000457236.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BTM0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566009.1	SMPD3-010	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566466.1	SMPD3-007	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563455.1	SMPD3-008	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566723.1	SMPD3-006	524	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563396.1	SMPD3-011	608	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567811.1	SMPD3-009	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567223.2	SMPD3-013	530	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 576 bps,

Version

ENST00000567811.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000436211 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000567811.1 SMPD3-009

Summary