Transcript: ENST00000353546.3 ARFGAP1-003

Description

ADP-ribosylation factor GTPase activating protein 1 [Source:HGNC Symbol;Acc:15852]

Gene Synonyms

ARF1GAP, FLJ10767, HRIHFB2281, bA261N11.3

Location

Chromosome 20: 61,904,217-61,920,696 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 10 domains and features, is associated with 9795 variant alleles and maps to 622 oligo probes.

Gene

This transcript is a product of gene ENSG00000101199.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000353546.3	ARFGAP1-003	2776	414aa	ENSP00000314615.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13516	E5RIU2 F8VWB3 F8VWH9 Q8N6T3	NM_175609.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370275.4	ARFGAP1-004	3467	403aa	ENSP00000359298.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63326	E5RHC5 E5RIU2 F8VWB3 Q8N6T3	NM_001281482.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370283.4	ARFGAP1-001	3278	406aa	ENSP00000359306.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13515	E5RHC5 E5RIU2 F8VWB3 F8W1U7 Q8N6T3	NM_018209.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519273.2	ARFGAP1-201	1548	293aa	ENSP00000443716.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63328	B7Z8H8	NM_001281484.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547204.1	ARFGAP1-007	1327	340aa	ENSP00000449800.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VWH9	NM_001281483.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519604.1	ARFGAP1-202	1311	361aa	ENSP00000430500.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63327	E7EV62 F8VWH9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549047.1	ARFGAP1-021	1040	271aa	ENSP00000447037.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W1U7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522403.2	ARFGAP1-015	995	261aa	ENSP00000430929.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHC5 E5RIU2 F8VWB3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000549076.1	ARFGAP1-023	913	104aa	ENSP00000449849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000518601.2	ARFGAP1-016	905	244aa	ENSP00000429674.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHT6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000523114.1	ARFGAP1-010	579	79aa	ENSP00000428355.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIU2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000523460.1	ARFGAP1-012	572	153aa	ENSP00000429770.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHH7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550188.1	ARFGAP1-006	572	122aa	ENSP00000449515.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIU2 F8VWB3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000520485.1	ARFGAP1-008	1548	130aa	ENSP00000427717.1	Nonsense mediated decay		E5RGL6 E5RIU2	-	-
ENST00000518794.2	ARFGAP1-002	2727	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468975.2	ARFGAP1-009	2640	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518618.2	ARFGAP1-019	1244	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000395285.3	ARFGAP1-005	2697	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519531.1	ARFGAP1-014	1490	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000518691.1	ARFGAP1-018	1162	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000524192.2	ARFGAP1-013	980	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000520022.2	ARFGAP1-017	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522959.1	ARFGAP1-011	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 2,776 bps, Translation length: 414 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N6T3

CCDS

This transcript is a member of the Human CCDS set: CCDS13516

Version

ENST00000353546.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000316914 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000353546.3 ARFGAP1-003

Summary