Transcript: ENST00000372276.3 CD40-002

Description

CD40 molecule, TNF receptor superfamily member 5 [Source:HGNC Symbol;Acc:11919]

Gene Synonyms

Bp50, CDW40, TNFRSF5, p50

Location

About this transcript

This transcript has 8 exons, is annotated with 20 domains and features, is associated with 5041 variant alleles and maps to 566 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372285.3	CD40-001	1729	277aa	ENSP00000361359.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13393	P25942 Q09LL4	NM_001250.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372276.3	CD40-002	1623	203aa	ENSP00000361350.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13394	P25942 Q09LL4	NM_152854.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000466205.1	CD40-006	822	159aa	ENSP00000434825.1	Nonsense mediated decay		Q09LL4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000489304.1	CD40-003	1733	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477696.1	CD40-005	771	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461171.1	CD40-004	710	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,623 bps, Translation length: 203 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P25942

CCDS

This transcript is a member of the Human CCDS set: CCDS13394

Version

ENST00000372276.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000080377 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.