Transcript: ENST00000558376.1 RABGGTA-001

Description

Rab geranylgeranyltransferase, alpha subunit [Source:HGNC Symbol;Acc:9795]

Gene Synonyms

PTAR3

Location

Chromosome 14: 24,734,763-24,740,755 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 21 domains and features, is associated with 3384 variant alleles and maps to 589 oligo probes.

Gene

This transcript is a product of gene ENSG00000100949.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399409.3	RABGGTA-003	2265	567aa	ENSP00000382341.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45088	D3DS70 H0YLG7 Q92696	NM_004581.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000216840.6	RABGGTA-002	2088	567aa	ENSP00000216840.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45088	D3DS70 H0YLG7 Q92696	NM_182836.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560777.1	RABGGTA-012	1197	176aa	ENSP00000453201.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLG7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560521.1	RABGGTA-009	680	175aa	ENSP00000453596.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000559974.1	RABGGTA-008	1963	424aa	ENSP00000453890.1	Nonsense mediated decay		H0YLH3	-	-
ENST00000558376.1	RABGGTA-001	1883	424aa	ENSP00000453207.1	Nonsense mediated decay		H0YLH3	-	-
ENST00000560243.1	RABGGTA-010	704	136aa	ENSP00000453001.1	Nonsense mediated decay		H0YKZ8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000560127.1	RABGGTA-019	573	73aa	ENSP00000452890.1	Nonsense mediated decay		H0YKP6	-	-
ENST00000559586.1	RABGGTA-017	889	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560871.1	RABGGTA-015	886	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560163.1	RABGGTA-021	877	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558534.1	RABGGTA-016	753	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558954.1	RABGGTA-020	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000559551.1	RABGGTA-007	2060	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560998.1	RABGGTA-005	1997	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000543002.1	RABGGTA-006	1329	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558649.1	RABGGTA-013	768	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561055.1	RABGGTA-011	735	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560207.1	RABGGTA-022	678	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558936.1	RABGGTA-018	648	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559850.1	RABGGTA-014	534	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 13, Transcript length: 1,883 bps, Translation length: 424 residues

Version

ENST00000558376.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000415310 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000558376.1 RABGGTA-001

Summary