Transcript: ENST00000397276.2 PABPN1-003

Description

poly(A) binding protein, nuclear 1 [Source:HGNC Symbol;Acc:8565]

Gene Synonyms

OPMD, PAB2, PABII, PABP-2, PABP2

Location

Chromosome 14: 23,790,666-23,795,372 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 12 domains and features, is associated with 2763 variant alleles and maps to 474 oligo probes.

Gene

This transcript is a product of gene ENSG00000100836.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216727.4	PABPN1-001	2001	306aa	ENSP00000216727.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9592	G3V4T2 Q86U42	NM_004643.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397276.2	PABPN1-003	2768	296aa	ENSP00000380446.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DEH8 Q86U42	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000556821.1	PABPN1-004	1220	178aa	ENSP00000451970.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V4T2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557702.1	PABPN1-006	778	168aa	ENSP00000450724.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DEH8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555295.1	PABPN1-009	406	96aa	ENSP00000451592.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000556809.1	PABPN1-005	969	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553960.1	PABPN1-008	817	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554062.1	PABPN1-007	589	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,768 bps, Translation length: 296 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86U42

Version

ENST00000397276.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000071766 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000397276.2 PABPN1-003

Summary