Transcript: ENST00000381551.4 PDGFB-002

Description

platelet-derived growth factor beta polypeptide [Source:HGNC Symbol;Acc:8800]

Gene Synonyms

IBGC5, PDGF-2, PDGF2, SIS, SSV, c-sis

Location

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 7544 variant alleles and maps to 241 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331163.6	PDGFB-001	3497	241aa	ENSP00000330382.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13987	A9UJN9 A9UJP0 P01127 P78450 Q9UE56 Q9UE57	NM_002608.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381551.4	PDGFB-002	1125	226aa	ENSP00000370963.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33650	A9UJN9 A9UJP0 P01127 Q9UE56 Q9UE57	NM_033016.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440375.1	PDGFB-004	556	136aa	ENSP00000405780.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A9UJN9 Q9UE57	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455790.1	PDGFB-003	554	144aa	ENSP00000402306.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A9UJN9 A9UJP0 Q9UE57	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,125 bps, Translation length: 226 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P01127

CCDS

This transcript is a member of the Human CCDS set: CCDS33650

Version

ENST00000381551.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000321044 (version 13)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.