Transcript: ENST00000320936.5 CIRBP-001

Description

cold inducible RNA binding protein [Source:HGNC Symbol;Acc:1982]

Gene Synonyms

A18HNRNP, CIRP

Location

Chromosome 19: 1,269,336-1,273,171 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 3133 variant alleles and maps to 594 oligo probes.

Gene

This transcript is a product of gene ENSG00000099622.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000444172.2	CIRBP-201	3025	244aa	ENSP00000407512.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KT17	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589710.1	CIRBP-005	1738	297aa	ENSP00000466897.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6W5Y5 K7EJV5 K7ELV6 K7EMY9 K7EPM4 K7EQX4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413636.2	CIRBP-008	1543	263aa	ENSP00000412831.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E2X2 K7ELV6 K7EQX4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588030.1	CIRBP-011	1508	172aa	ENSP00000468788.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12059	K7EJV5 K7ELV6 K7EMY9 K7EQX4 Q14011 Q53XX5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586472.1	CIRBP-043	1333	172aa	ENSP00000465779.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12059	K7EJV5 K7ELV6 K7EMY9 K7EQX4 Q14011 Q53XX5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000320936.5	CIRBP-001	1328	172aa	ENSP00000322887.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12059	K7EJV5 K7ELV6 K7EMY9 K7EQX4 Q14011 Q53XX5	NM_001280.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589235.1	CIRBP-006	1073	168aa	ENSP00000467848.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJV5 K7ELV6 K7EMY9 K7EPM4 K7EQX4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587896.1	CIRBP-046	1072	297aa	ENSP00000466025.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6W5Y5 K7EJV5 K7ELV6 K7EMY9 K7EPM4 K7EQX4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587323.1	CIRBP-032	1059	297aa	ENSP00000465077.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6W5Y5 K7EJV5 K7ELV6 K7EMY9 K7EPM4 K7EQX4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588090.1	CIRBP-018	1019	172aa	ENSP00000466207.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12059	K7EJV5 K7ELV6 K7EMY9 K7EQX4 Q14011 Q53XX5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588230.1	CIRBP-045	1013	297aa	ENSP00000465558.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6W5Y5 K7EJV5 K7ELV6 K7EMY9 K7EPM4 K7EQX4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588344.1	CIRBP-036	870	70aa	ENSP00000466238.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ELV6 K7EQX4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586773.1	CIRBP-038	840	168aa	ENSP00000468645.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJV5 K7ELV6 K7EMY9 K7EPM4 K7EQX4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000585630.1	CIRBP-037	820	172aa	ENSP00000466110.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12059	K7EJV5 K7ELV6 K7EMY9 K7EQX4 Q14011 Q53XX5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589660.1	CIRBP-034	773	172aa	ENSP00000468224.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12059	K7EJV5 K7ELV6 K7EMY9 K7EQX4 Q14011 Q53XX5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591935.1	CIRBP-020	746	168aa	ENSP00000467734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJV5 K7ELV6 K7EMY9 K7EPM4 K7EQX4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589686.1	CIRBP-025	705	168aa	ENSP00000465334.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJV5 K7ELV6 K7EMY9 K7EPM4 K7EQX4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589266.1	CIRBP-017	640	89aa	ENSP00000467138.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ELV6 K7ENX8 K7EQX4	-	-
ENST00000588411.1	CIRBP-015	619	105aa	ENSP00000465338.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJV5 K7ELV6 K7EQX4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586548.1	CIRBP-021	590	159aa	ENSP00000466712.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJV5 K7ELV6 K7EMY9 K7EQX4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000591659.1	CIRBP-024	587	173aa	ENSP00000468097.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJV5 K7ELV6 K7EQX4 K7ER40	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592051.1	CIRBP-013	573	32aa	ENSP00000468016.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQX4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592815.1	CIRBP-048	331	37aa	ENSP00000467028.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENN6 K7EQX4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000590347.1	CIRBP-009	3112	135aa	ENSP00000467307.1	Nonsense mediated decay		K7ELT6 K7ELV6 K7EQX4	-	-
ENST00000587169.1	CIRBP-004	3025	79aa	ENSP00000465114.1	Nonsense mediated decay		K7EQL0 K7EQX4	-	-
ENST00000591097.1	CIRBP-010	1507	60aa	ENSP00000468229.1	Nonsense mediated decay		K7EIF7 K7EQX4	-	-
ENST00000585914.1	CIRBP-007	1052	202aa	ENSP00000467948.1	Nonsense mediated decay		K7EJV5 K7ELV6 K7EMY9 K7EQR7 K7EQX4	-	-
ENST00000586636.1	CIRBP-033	938	168aa	ENSP00000464906.1	Nonsense mediated decay		K7EJV5 K7ELV6 K7EMY9 K7EPM4 K7EQX4	-	-
ENST00000591055.1	CIRBP-026	928	135aa	ENSP00000466216.1	Nonsense mediated decay		K7ELT6 K7ELV6 K7EQX4	-	-
ENST00000590171.1	CIRBP-030	905	60aa	ENSP00000464728.1	Nonsense mediated decay		K7EIF7 K7EQX4	-	-
ENST00000585913.1	CIRBP-035	856	168aa	ENSP00000467449.1	Nonsense mediated decay		K7EJV5 K7ELV6 K7EMY9 K7EPM4 K7EQX4	-	-
ENST00000591376.1	CIRBP-027	830	79aa	ENSP00000464830.1	Nonsense mediated decay		K7EQL0 K7EQX4	-	-
ENST00000592412.1	CIRBP-029	809	79aa	ENSP00000467876.1	Nonsense mediated decay		K7EQL0 K7EQX4	-	-
ENST00000593048.1	CIRBP-028	650	79aa	ENSP00000467791.1	Nonsense mediated decay		K7EQL0 K7EQX4	-	-
ENST00000592234.1	CIRBP-039	566	85aa	ENSP00000466131.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000590188.1	CIRBP-041	199	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000593093.1	CIRBP-002	3528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590704.1	CIRBP-003	1456	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592467.1	CIRBP-012	796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000593128.1	CIRBP-023	796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589161.1	CIRBP-016	769	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588917.1	CIRBP-049	664	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000591622.1	CIRBP-022	548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587812.1	CIRBP-044	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000593283.1	CIRBP-031	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586555.1	CIRBP-050	487	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,328 bps, Translation length: 172 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14011

CCDS

This transcript is a member of the Human CCDS set: CCDS12059

Version

ENST00000320936.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000449997 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000320936.5 CIRBP-001

Summary