Transcript: ENST00000209875.4 CBX5-002

Description

chromobox homolog 5 [Source:HGNC Symbol;Acc:1555]

Gene Synonyms

HEL25, HP1, HP1-ALPHA, HP1A, HP1Hs-alpha

Location

About this transcript

This transcript has 5 exons, is annotated with 18 domains and features, is associated with 21178 variant alleles and maps to 873 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000209875.4	CBX5-002	11528	191aa	ENSP00000209875.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8875	F8VNY3 P45973	NM_012117.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439541.2	CBX5-004	1832	191aa	ENSP00000401009.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8875	F8VNY3 P45973	NM_001127321.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550411.1	CBX5-003	894	191aa	ENSP00000449207.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8875	F8VNY3 P45973	NM_001127322.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552562.1	CBX5-005	675	91aa	ENSP00000450190.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VNY3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547872.1	CBX5-006	745	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 11,528 bps, Translation length: 191 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P45973

CCDS

This transcript is a member of the Human CCDS set: CCDS8875

Version

ENST00000209875.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000405467 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.