Transcript: ENST00000469852.1 COL9A3-002

Description

collagen, type IX, alpha 3 [Source:HGNC Symbol;Acc:2219]

Gene Synonyms

DJ885L7.4.1, EDM3, FLJ90759, IDD, MED

Location

Chromosome 20: 61,462,923-61,467,509 forward strand.

About this transcript

This transcript has 3 exons, is associated with 2601 variant alleles and maps to 259 oligo probes.

Gene

This transcript is a product of gene ENSG00000092758.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000343916.3	COL9A3-001	2485	684aa	ENSP00000341640.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13505	Q14050 Q96IF4	NM_001853.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452372.1	COL9A3-005	596	191aa	ENSP00000394280.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q4VXW1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000462700.1	COL9A3-007	1237	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467819.1	COL9A3-003	993	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489045.1	COL9A3-004	838	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463487.1	COL9A3-015	760	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477612.1	COL9A3-009	635	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466532.1	COL9A3-014	539	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466192.1	COL9A3-010	2194	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472880.1	COL9A3-013	959	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469852.1	COL9A3-002	901	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469802.1	COL9A3-006	680	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481800.1	COL9A3-012	548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490398.1	COL9A3-011	496	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 901 bps,

Version

ENST00000469852.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000080072 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000469852.1 COL9A3-002

Summary