Transcript: ENST00000537796.1 NECAP1-004

Description

NECAP endocytosis associated 1 [Source:HGNC Symbol;Acc:24539]

Gene Synonyms

DKFZP566B183

Location

Chromosome 12: 8,244,356-8,250,367 forward strand.

About this transcript

This transcript has 3 exons, is associated with 2489 variant alleles and maps to 363 oligo probes.

Gene

This transcript is a product of gene ENSG00000089818.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000339754.5	NECAP1-001	2587	275aa	ENSP00000341737.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8589	A8K3C2 F5H2U7 Q8NC96	NM_015509.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540083.1	NECAP1-010	863	116aa	ENSP00000439319.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2U7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000450991.2	NECAP1-003	2446	102aa	ENSP00000401963.2	Nonsense mediated decay		Q8NC96	-	-
ENST00000541948.1	NECAP1-009	582	110aa	ENSP00000440658.1	Nonsense mediated decay		F5GYH1	-	-
ENST00000537796.1	NECAP1-004	3129	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000545807.1	NECAP1-007	658	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000544891.1	NECAP1-008	627	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000546181.1	NECAP1-005	621	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542095.1	NECAP1-006	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 3,129 bps,

Version

ENST00000537796.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000400253 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000537796.1 NECAP1-004

Summary