Transcript: ENST00000460943.1 LAT2-002

Description

linker for activation of T cells family, member 2 [Source:HGNC Symbol;Acc:12749]

Gene Synonyms

HSPC046, LAB, NTAL, WBS15, WBSCR15, WBSCR5, WSCR5

Location

Chromosome 7: 73,623,748-73,644,161 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 5 domains and features, is associated with 11554 variant alleles and maps to 493 oligo probes.

Gene

This transcript is a product of gene ENSG00000086730.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000460943.1	LAT2-002	2527	243aa	ENSP00000420494.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5566	C9JA24 C9JDY7 F8W947 Q9GZY6	NM_032464.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000398475.1	LAT2-003	2453	243aa	ENSP00000381492.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5566	C9JA24 C9JDY7 F8W947 Q9GZY6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344995.5	LAT2-001	2360	243aa	ENSP00000344881.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5566	C9JA24 C9JDY7 F8W947 Q9GZY6	NM_014146.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000275635.7	LAT2-009	1869	243aa	ENSP00000275635.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5566	C9JA24 C9JDY7 F8W947 Q9GZY6	NM_032463.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470709.1	LAT2-012	586	100aa	ENSP00000419150.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JXP0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465116.1	LAT2-010	585	58aa	ENSP00000420549.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDY7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000361082.3	LAT2-006	581	63aa	ENSP00000354374.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDY7 F8W947	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000475494.1	LAT2-011	561	100aa	ENSP00000417533.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JA24 C9JDY7 F8W947	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000488266.1	LAT2-004	1694	111aa	ENSP00000433807.1	Nonsense mediated decay		C9JA24 C9JDY7 F8W947 Q9GZY6	-	-
ENST00000490586.1	LAT2-008	740	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491595.1	LAT2-007	618	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 11, Transcript length: 2,527 bps, Translation length: 243 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9GZY6

CCDS

This transcript is a member of the Human CCDS set: CCDS5566

Version

ENST00000460943.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000277062 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000460943.1 LAT2-002

Summary