Transcript: ENST00000326470.5 SSH1-003

Description

slingshot protein phosphatase 1 [Source:HGNC Symbol;Acc:30579]

Gene Synonyms

KIAA1298, SSH1L

Location

Chromosome 12: 109,185,702-109,221,327 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 16 domains and features, is associated with 16236 variant alleles and maps to 391 oligo probes.

Gene

This transcript is a product of gene ENSG00000084112.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000326495.5	SSH1-001	8538	1049aa	ENSP00000315713.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9121	Q8WYL5	NM_018984.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360239.3	SSH1-201	8488	737aa	ENSP00000353374.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8WYL5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000326470.5	SSH1-003	2432	703aa	ENSP00000326107.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53825	Q8WYL5	NM_001161331.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551165.1	SSH1-002	2354	692aa	ENSP00000448824.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55882	Q8WYL5	NM_001161330.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546697.1	SSH1-007	583	154aa	ENSP00000446652.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W1D9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546433.1	SSH1-004	5621	95aa	ENSP00000447629.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000548522.1	SSH1-005	602	37aa	ENSP00000448586.1	Nonsense mediated decay		F8VS18	-	-
ENST00000546812.1	SSH1-006	588	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547862.2	SSH1-010	625	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547381.1	SSH1-008	476	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,432 bps, Translation length: 703 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8WYL5

CCDS

This transcript is a member of the Human CCDS set: CCDS53825

Version

ENST00000326470.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000403727 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000326470.5 SSH1-003

Summary